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EpiStack v1 — FLF competition
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analyses
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covid
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sources
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non curated
Folder: v1/analyses/covid/sources/non-curated
68 items under this folder.
Jul 23, 2026
S-47 - WHO-China joint mission report — animal and environment (Huanan market) section
Jul 23, 2026
S-10 - Chen et al. 2020 Lancet — 99-case single-hospital descriptive series
Jul 23, 2026
S-11 - Débarre & Hensel 2025 — critical reexamination of the recovered SARS-CoV-2 sequencing data
Jul 23, 2026
S-12 - McCowan 2025 — imbalanced hypothesis-testing framework in the multiple-introductions claim
Jul 23, 2026
S-14 - Worobey 2021 Science — dissecting the early COVID-19 cases in Wuhan (the first-case correction)
Jul 23, 2026
S-15 - China CDC Research Square preprint — Huanan market environmental & animal surveillance
Jul 23, 2026
S-18 - WHO-China joint study (2021) — early-case epidemiology and residential-location maps
Jul 23, 2026
S-2 - Pekar et al. 2021 — Timing the SARS-CoV-2 index case in Hubei province
Jul 23, 2026
S-20 - Freuling et al. 2020 — raccoon dog experimental SARS-CoV-2 infection
Jul 23, 2026
S-21 - China CDC raw metagenomic sequencing data release — Huanan market samples (NGDC GSA - NCBI BioProject)
Jul 23, 2026
S-24 - Crits-Christoph et al. — Genetic evidence of susceptible wildlife in SARS-CoV-2-positive Huanan market samples (Zenodo report)
Jul 23, 2026
S-25 - Esquivel Gomez et al. 2024 — recombination-aware phylogenetic analysis of SARS-CoV-2's origin
Jul 23, 2026
S-26 - Débarre & Worobey 2024 — reply to Stoyan & Chiu, reaffirming market centrality
Jul 23, 2026
S-28 - Sia et al. 2020 — pathogenesis and transmission of SARS-CoV-2 in golden hamsters
Jul 23, 2026
S-29 - Shi et al. 2020 — susceptibility of ferrets, cats, dogs and other domesticated animals to SARS-CoV-2
Jul 23, 2026
S-3 - Kumar et al. 2021 — An evolutionary portrait of the progenitor SARS-CoV-2
Jul 23, 2026
S-30 - Weissman 2024 JRSS-A letter — proximity ascertainment bias in early case locations
Jul 23, 2026
S-31 - Crits-Christoph et al. — Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic (bioRxiv preprint)
Jul 23, 2026
S-32 - Débarre & Worobey 2024 — reply to Weissman, against systematic ascertainment bias
Jul 23, 2026
S-33 - Damas et al. 2020 — comparative-structural ACE2 host-range prediction for SARS-CoV-2
Jul 23, 2026
S-36 - Zhang, Demaneuf et al. 2022 — within-market spatial critique, superspreader-not-spillover reading
Jul 23, 2026
S-37 - Deng et al. 2020 — 35-species serosurvey excludes intermediate hosts
Jul 23, 2026
S-38 - Chang et al. 2022 — Wuhan blood-donor serosurvey, September-December 2019
Jul 23, 2026
S-4 - Bloom 2021 — Recovery of deleted deep sequencing data from the early Wuhan epidemic
Jul 23, 2026
S-40 - Xiao K. et al. 2020 — isolation of SARS-CoV-2-related coronavirus from Malayan pangolins
Jul 23, 2026
S-41 - Guan et al. 2003 — SARS-CoV-like viruses isolated from market civets, southern China
Jul 23, 2026
S-42 - Débarre — What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market
Jul 23, 2026
S-43 - Bloom — Importance of quantifying the number of viral reads in metagenomic sequencing of Huanan market samples
Jul 23, 2026
S-45 - Reusken et al. 2013 — MERS-CoV neutralising antibodies in dromedary camels
Jul 23, 2026
S-49 - Zhou et al. 2020 Nature — RaTG13, a bat coronavirus of probable bat origin
Jul 23, 2026
S-5 - Tang et al. 2020 — On the origin and continuing evolution of SARS-CoV-2 (L-S types)
Jul 23, 2026
S-50 - WHO SAGO statement on newly released China CDC metagenomics data from Huanan market
Jul 23, 2026
S-51 - Zhou et al. 2020 Current Biology — RmYN02 natural S1-S2 insertion
Jul 23, 2026
S-53 - Nickels et al. — open letter requesting retraction of Crits-Christoph et al. 2024 (Cell)
Jul 23, 2026
S-55 - Deigin Segreto 2021 — SARS-CoV-2's claimed natural origin is undermined by genome-sequence issues
Jul 23, 2026
S-56 - Coutard et al. 2020 — Furin-like cleavage site absent in CoV of the same clade
Jul 23, 2026
S-57 - Xia 2020 — Extreme genomic CpG deficiency in SARS-CoV-2
Jul 23, 2026
S-58 - Starr et al. 2020 — Deep mutational scanning of the SARS-CoV-2 RBD
Jul 23, 2026
S-59 - Chan Zhan 2021-22 — Emergence of the Spike Furin Cleavage Site in SARS-CoV-2
Jul 23, 2026
S-6 - MacLean et al. 2020 — No evidence for distinct types in the evolution of SARS-CoV-2
Jul 23, 2026
S-61 - Chambers, Abdullah Sadhu 2026 — Ancestral reconstruction of the S1-S2 insertion codon frame
Jul 23, 2026
S-62 - Fuqing Wu 2023 — Updated analysis to reject the laboratory-engineering hypothesis
Jul 23, 2026
S-63 - Rootclaim's response to Scott Alexander's ACX review
Jul 23, 2026
S-66 - DARPA's internal rejection review of the DEFUSE proposal
Jul 23, 2026
S-67 - Judge Will van Treuren's written decision
Jul 23, 2026
S-68 - ODNI declassified Updated Assessment on COVID-19 Origins (Aug 2021)
Jul 23, 2026
S-69 - ODNI Report on Potential Links Between WIV and COVID-19 Origins (June 2023)
Jul 23, 2026
S-7 - Massey et al. 2023 — Unwarranted exclusion of intermediate lineage A-B genomes
Jul 23, 2026
S-71 - Senate HELP Committee minority interim report on COVID-19 origins (Oct 2022)
Jul 23, 2026
S-72 - Muddy Waters- The Origins of COVID-19 (Senate HELP GOP staff report, Apr 2023)
Jul 23, 2026
S-73 - Peter Miller's written case against the lab-leak theory
Jul 23, 2026
S-74 - State Department Fact Sheet- Activity at the Wuhan Institute of Virology (Jan 2021)
Jul 23, 2026
S-75 - Li Xu's master's thesis on the 2012 Mojiang miners' pneumonia cases
Jul 23, 2026
S-76 - The Rootclaim vs. Peter Miller COVID-origins debate, video record
Jul 23, 2026
S-77 - Nature addendum disclosing RaTG13's identity with the Mojiang mine sample RaBtCoV-4991
Jul 23, 2026
S-78 - Washington Post report on 2018 State Department cables warning of WIV biosafety issues
Jul 23, 2026
S-79 - Scott Alexander's ACX review of the Rootclaim debate
Jul 23, 2026
S-8 - Pekar et al. 2025 — reported intermediate lineage A-B genomes are instead derived
Jul 23, 2026
S-80 - Daniel Filan's Bayesian analysis of COVID origins
Jul 23, 2026
S-81 - FOIA-released NIAID-EcoHealth Alliance gain-of-function correspondence and grant records
Jul 23, 2026
S-82 - DRASTIC investigation into the WIV pathogen databases taken offline in Sept 2019
Jul 23, 2026
S-83 - Judge Eric Stansifer's response to Michael Weissman
Jul 23, 2026
S-85 - House Select Subcommittee staff report on EcoHealth Alliance and WIV funding (May 2024)
Jul 23, 2026
S-86 - Levin's NBER Bayesian assessment of COVID-19 origins
Jul 23, 2026
S-89 - Cowling et al. 2015 — Preliminary epidemiologic assessment of the MERS-CoV outbreak in South Korea
Jul 23, 2026
S-9 - Huang et al. 2020 Lancet — clinical features of the first 41 hospitalized 2019-nCoV patients
Jul 23, 2026
S-90 - Faria et al. 2014 — The early spread and epidemic ignition of HIV-1 in human populations
Jul 23, 2026
S-91 - Chinese Embassy (US) 2021 — official rebuttal of Bloom's deleted-sequences allegation
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